SequenceServer Cloud: BLAST Analysis Software
SequenceServer Cloud helps research institutions and biotech companies manage sequence analysis. It is designed for teams requiring secure collaboration and cloud-based computing for bioinformatics workflows.
At a glance
- Category
- Software Development
- Best for
- Research Institutions, Pharmaceutical Companies, Academic Labs, Biotech Organizations, Teaching Labs
- Pricing
- Paid plans start at $49/month for Solo users, with Team ($189/month) and Business ($399/month) tiers for larger groups. A 10-day free trial is available.
- Key use cases
- Comparative Genomics, Gene Curation and Annotation, Diagnostic Marker Design, Functional Characterization, Variant Calling Analysis
- Integrations
- Python API, NCBI SRA, UniProt, jBrowse, IGV
- Official website
- www.sequenceserver.com
SequenceServer Cloud is a hosted BLAST analysis platform designed for researchers and bioinformaticians. It provides browser-based access to run searches against custom, standard, and NCBI SRA databases, reducing the need for local server management.
The tool is designed for academic labs, pharmaceutical companies, and research institutions. It supports workflows involving comparative genomics and gene curation, providing visual tools like Circos-style plots and alignment graphs to help interpret sequence data.
Beyond search capabilities, the platform supports team collaboration through shared datasets and secure access controls. Buyers should confirm which pricing tier fits their user count, as collaboration and API access are available on the Team and Business plans.
Users may also use the open-source core for self-hosting, while the cloud version provides managed infrastructure and additional feature sets.
Key Features
Supports searches against custom FASTA files, standard sequence databases, and the NCBI SRA.
Provides pairwise alignment graphs, Circos-style overview plots, and length distribution histograms.
Includes AI detection of nucleotides versus amino-acids and automated selection of the BLAST method.
Supports annotation of bacterial genomes, plasmids, and DNA sequences with genes and restriction enzyme sites.
Features SSO integration, SSL/TLS encryption, and shared datasets for team members.
Offers API access via Python and the command-line for submitting and retrieving analyses.
Use Cases
Comparing genomes across multiple species to identify conserved regions, homologous genes, and evolutionary relationships.
Validating and refining gene predictions by searching against known protein domains and sequence databases.
Identifying unique sequence regions in target organisms to help design PCR primers or CRISPR guide RNA.
Analyzing novel genes in non-model organisms by comparing them to known functional domains in other species.
Exploring SRA read alignments to help identify genetic variants and build SNP marker arrays.
Best For
Integrations
Pricing
Paid plans start at $49/month for Solo users, with Team ($189/month) and Business ($399/month) tiers for larger groups. A 10-day free trial is available.
FAQ
It is designed for individual researchers, academic labs, pharmaceutical companies, and biotech organizations that need to perform BLAST searches on custom or standard databases.
Pricing includes a Solo plan ($49/month), a Team plan ($189/month) for collaboration and API access, and a Business plan ($399/month) for SSO and audit trails.
Yes, the core of SequenceServer is open-source and can be self-hosted on macOS or Linux systems.
Yes, the Team and Business plans provide API access via Python and the command-line for remote BLAST queries.
Source category: Software Development
Source subcategory: Bioinformatics Software
