AI TOOL PROFILE
SequenceServer Cloud: BLAST Analysis Software
- Software Development
- Bioinformatics Software
- Research Institutions
- Pharmaceutical Companies
- Academic Labs
- Biotech Organizations
- Teaching Labs
Pricing
Paid plans start at $49/month for Solo users, with Team ($189/month) and Business ($399/month) tiers for larger groups. A 10-day free trial is available.
At a glance
- Best for
- Research Institutions, Pharmaceutical Companies, Academic Labs, Biotech Organizations, Teaching Labs
- Key use cases
- Comparative Genomics, Gene Curation and Annotation, Diagnostic Marker Design, Functional Characterization, Variant Calling Analysis
- Integrations
- Python API, NCBI SRA, UniProt, jBrowse, IGV
- Official website
- Visit sequenceserver cloud official website
How AI is used
SequenceServer Cloud is a hosted BLAST analysis platform designed for researchers and bioinformaticians. It provides browser-based access to run searches against custom, standard, and NCBI SRA databases, reducing the need for local server management.
The tool is designed for academic labs, pharmaceutical companies, and research institutions. It supports workflows involving comparative genomics and gene curation, providing visual tools like Circos-style plots and alignment graphs to help interpret sequence data.
Beyond search capabilities, the platform supports team collaboration through shared datasets and secure access controls. Buyers should confirm which pricing tier fits their user count, as collaboration and API access are available on the Team and Business plans.
Users may also use the open-source core for self-hosting, while the cloud version provides managed infrastructure and additional feature sets.
Key Features
BLAST Search Engine
Supports searches against custom FASTA files, standard sequence databases, and the NCBI SRA.
Sequence Visualization
Provides pairwise alignment graphs, Circos-style overview plots, and length distribution histograms.
AI-Assisted Interface
Includes AI detection of nucleotides versus amino-acids and automated selection of the BLAST method.
DNA Visualizer
Supports annotation of bacterial genomes, plasmids, and DNA sequences with genes and restriction enzyme sites.
Secure Collaboration
Features SSO integration, SSL/TLS encryption, and shared datasets for team members.
Programmatic Access
Offers API access via Python and the command-line for submitting and retrieving analyses.
Use Cases
Comparative Genomics
Comparing genomes across multiple species to identify conserved regions, homologous genes, and evolutionary relationships.
Gene Curation and Annotation
Validating and refining gene predictions by searching against known protein domains and sequence databases.
Diagnostic Marker Design
Identifying unique sequence regions in target organisms to help design PCR primers or CRISPR guide RNA.
Functional Characterization
Analyzing novel genes in non-model organisms by comparing them to known functional domains in other species.
Variant Calling Analysis
Exploring SRA read alignments to help identify genetic variants and build SNP marker arrays.
Integrations
- Python API
- NCBI SRA
- UniProt
- jBrowse
- IGV
FAQ
Who is SequenceServer Cloud designed for?
- It is designed for individual researchers, academic labs, pharmaceutical companies, and biotech organizations that need to perform BLAST searches on custom or standard databases.
What are the different pricing tiers?
- Pricing includes a Solo plan ($49/month), a Team plan ($189/month) for collaboration and API access, and a Business plan ($399/month) for SSO and audit trails.
Can I run SequenceServer without the cloud service?
- Yes, the core of SequenceServer is open-source and can be self-hosted on macOS or Linux systems.
Does the software support programmatic searches?
- Yes, the Team and Business plans provide API access via Python and the command-line for remote BLAST queries.
Source category: Software Development
Source subcategory: Bioinformatics Software
More tools in Software Development
Other published listings in the Software Development category.
